agentic-proteins Canonical Migration Guide¶
This guide shows how compatibility imports map back to canonical package ownership. The point is not to preserve the bridge forever; it is to make every remaining legacy path reviewable and replaceable.
Current Posture¶
- total compatibility modules: 117
- wrapper modules: 112
- dead modules: 5
Migration Map¶
| legacy module | status | canonical target(s) | migration action |
|---|---|---|---|
agentic_proteins.__init__ |
wrapper |
bijux_proteomics_runtime |
replace agentic_proteins.__init__ with bijux_proteomics_runtime and retire the compat import |
agentic_proteins.agents |
wrapper |
bijux_proteomics_runtime.execution.agents.catalogbijux_proteomics_runtime.execution.agents.contracts |
replace agentic_proteins.agents with one of bijux_proteomics_runtime.execution.agents.catalog, bijux_proteomics_runtime.execution.agents.contracts based on the live owner |
agentic_proteins.agents.analysis |
dead |
none declared | delete agentic_proteins.agents.analysis after confirming no callers remain |
agentic_proteins.agents.analysis.failure_analysis |
wrapper |
bijux_proteomics_runtime.execution.agents.analysis.failure_analysis |
replace agentic_proteins.agents.analysis.failure_analysis with bijux_proteomics_runtime.execution.agents.analysis.failure_analysis and retire the compat import |
agentic_proteins.agents.analysis.sequence_analysis |
wrapper |
bijux_proteomics_runtime.execution.agents.analysis.sequence_analysis |
replace agentic_proteins.agents.analysis.sequence_analysis with bijux_proteomics_runtime.execution.agents.analysis.sequence_analysis and retire the compat import |
agentic_proteins.agents.analysis.structure |
wrapper |
bijux_proteomics_runtime.execution.agents.analysis.structure |
replace agentic_proteins.agents.analysis.structure with bijux_proteomics_runtime.execution.agents.analysis.structure and retire the compat import |
agentic_proteins.agents.base |
wrapper |
bijux_proteomics_runtime.execution.agents.base |
replace agentic_proteins.agents.base with bijux_proteomics_runtime.execution.agents.base and retire the compat import |
agentic_proteins.agents.base.base |
wrapper |
bijux_proteomics_runtime.execution.agents.base.base |
replace agentic_proteins.agents.base.base with bijux_proteomics_runtime.execution.agents.base.base and retire the compat import |
agentic_proteins.agents.catalog |
wrapper |
bijux_proteomics_runtime.execution.agents.catalog |
replace agentic_proteins.agents.catalog with bijux_proteomics_runtime.execution.agents.catalog and retire the compat import |
agentic_proteins.agents.contracts |
wrapper |
bijux_proteomics_runtime.execution.agents.contracts |
replace agentic_proteins.agents.contracts with bijux_proteomics_runtime.execution.agents.contracts and retire the compat import |
agentic_proteins.agents.coordination |
wrapper |
bijux_proteomics_runtime.execution.agents.coordination.coordinator |
replace agentic_proteins.agents.coordination with bijux_proteomics_runtime.execution.agents.coordination.coordinator and retire the compat import |
agentic_proteins.agents.coordination.coordinator |
wrapper |
bijux_proteomics_runtime.execution.agents.coordination.coordinator |
replace agentic_proteins.agents.coordination.coordinator with bijux_proteomics_runtime.execution.agents.coordination.coordinator and retire the compat import |
agentic_proteins.agents.execution |
wrapper |
bijux_proteomics_runtime.execution.agents.coordination |
replace agentic_proteins.agents.execution with bijux_proteomics_runtime.execution.agents.coordination and retire the compat import |
agentic_proteins.agents.execution.coordinator |
wrapper |
bijux_proteomics_runtime.execution.agents.coordination.coordinator |
replace agentic_proteins.agents.execution.coordinator with bijux_proteomics_runtime.execution.agents.coordination.coordinator and retire the compat import |
agentic_proteins.agents.planning |
dead |
none declared | delete agentic_proteins.agents.planning after confirming no callers remain |
agentic_proteins.agents.planning.compiler |
wrapper |
bijux_proteomics_runtime.execution.agents.planning.compiler |
replace agentic_proteins.agents.planning.compiler with bijux_proteomics_runtime.execution.agents.planning.compiler and retire the compat import |
agentic_proteins.agents.planning.generation |
wrapper |
bijux_proteomics_runtime.execution.agents.planning.generation |
replace agentic_proteins.agents.planning.generation with bijux_proteomics_runtime.execution.agents.planning.generation and retire the compat import |
agentic_proteins.agents.planning.planner |
wrapper |
bijux_proteomics_runtime.execution.agents.planning.planner |
replace agentic_proteins.agents.planning.planner with bijux_proteomics_runtime.execution.agents.planning.planner and retire the compat import |
agentic_proteins.agents.planning.schemas |
wrapper |
bijux_proteomics_runtime.execution.agents.planning.schemas |
replace agentic_proteins.agents.planning.schemas with bijux_proteomics_runtime.execution.agents.planning.schemas and retire the compat import |
agentic_proteins.agents.planning.validation |
wrapper |
bijux_proteomics_runtime.execution.agents.planning.validation |
replace agentic_proteins.agents.planning.validation with bijux_proteomics_runtime.execution.agents.planning.validation and retire the compat import |
agentic_proteins.agents.reporting |
dead |
none declared | delete agentic_proteins.agents.reporting after confirming no callers remain |
agentic_proteins.agents.reporting.reporting |
wrapper |
bijux_proteomics_runtime.execution.agents.reporting.reporting |
replace agentic_proteins.agents.reporting.reporting with bijux_proteomics_runtime.execution.agents.reporting.reporting and retire the compat import |
agentic_proteins.agents.schemas |
wrapper |
bijux_proteomics_runtime.execution.agents.schemas |
replace agentic_proteins.agents.schemas with bijux_proteomics_runtime.execution.agents.schemas and retire the compat import |
agentic_proteins.agents.verification |
dead |
none declared | delete agentic_proteins.agents.verification after confirming no callers remain |
agentic_proteins.agents.verification.critic |
wrapper |
bijux_proteomics_runtime.execution.agents.verification.critic |
replace agentic_proteins.agents.verification.critic with bijux_proteomics_runtime.execution.agents.verification.critic and retire the compat import |
agentic_proteins.agents.verification.input_validation |
wrapper |
bijux_proteomics_runtime.execution.agents.verification.input_validation |
replace agentic_proteins.agents.verification.input_validation with bijux_proteomics_runtime.execution.agents.verification.input_validation and retire the compat import |
agentic_proteins.agents.verification.quality_control |
wrapper |
bijux_proteomics_runtime.execution.agents.verification.quality_control |
replace agentic_proteins.agents.verification.quality_control with bijux_proteomics_runtime.execution.agents.verification.quality_control and retire the compat import |
agentic_proteins.execution |
wrapper |
bijux_proteomics_runtime.execution.graph_validationbijux_proteomics_runtime.runs.analysisbijux_proteomics_runtime.runs.loggingbijux_proteomics_runtime.runs.managerbijux_proteomics_runtime.runs.run_configbijux_proteomics_runtime.runs.telemetrybijux_proteomics_runtime.runs.tool_reliability |
replace agentic_proteins.execution with one of bijux_proteomics_runtime.execution.graph_validation, bijux_proteomics_runtime.runs.analysis, bijux_proteomics_runtime.runs.logging, bijux_proteomics_runtime.runs.manager, bijux_proteomics_runtime.runs.run_config, bijux_proteomics_runtime.runs.telemetry, bijux_proteomics_runtime.runs.tool_reliability based on the live owner |
agentic_proteins.execution.analysis |
wrapper |
bijux_proteomics_runtime.runs.analysis |
replace agentic_proteins.execution.analysis with bijux_proteomics_runtime.runs.analysis and retire the compat import |
agentic_proteins.execution.artifacts |
wrapper |
bijux_proteomics_runtime.runs.artifacts |
replace agentic_proteins.execution.artifacts with bijux_proteomics_runtime.runs.artifacts and retire the compat import |
agentic_proteins.execution.compiler |
wrapper |
bijux_proteomics_runtime.execution.compiler |
replace agentic_proteins.execution.compiler with bijux_proteomics_runtime.execution.compiler and retire the compat import |
agentic_proteins.execution.compiler.boundary |
wrapper |
bijux_proteomics_runtime.execution.compiler.boundary |
replace agentic_proteins.execution.compiler.boundary with bijux_proteomics_runtime.execution.compiler.boundary and retire the compat import |
agentic_proteins.execution.evaluation |
wrapper |
bijux_proteomics_runtime.execution.evaluation |
replace agentic_proteins.execution.evaluation with bijux_proteomics_runtime.execution.evaluation and retire the compat import |
agentic_proteins.execution.evaluation.evaluation |
wrapper |
bijux_proteomics_runtime.execution.evaluation.evaluation |
replace agentic_proteins.execution.evaluation.evaluation with bijux_proteomics_runtime.execution.evaluation.evaluation and retire the compat import |
agentic_proteins.execution.evaluation.observations |
wrapper |
bijux_proteomics_runtime.execution.evaluation.observations |
replace agentic_proteins.execution.evaluation.observations with bijux_proteomics_runtime.execution.evaluation.observations and retire the compat import |
agentic_proteins.execution.evaluation.schemas |
wrapper |
bijux_proteomics_runtime.execution.evaluation.schemas |
replace agentic_proteins.execution.evaluation.schemas with bijux_proteomics_runtime.execution.evaluation.schemas and retire the compat import |
agentic_proteins.execution.graphs |
wrapper |
bijux_proteomics_runtime.execution.graph_validation |
replace agentic_proteins.execution.graphs with bijux_proteomics_runtime.execution.graph_validation and retire the compat import |
agentic_proteins.execution.logging |
wrapper |
bijux_proteomics_runtime.runs.logging |
replace agentic_proteins.execution.logging with bijux_proteomics_runtime.runs.logging and retire the compat import |
agentic_proteins.execution.manager |
wrapper |
bijux_proteomics_runtime.runs.manager |
replace agentic_proteins.execution.manager with bijux_proteomics_runtime.runs.manager and retire the compat import |
agentic_proteins.execution.run_config |
wrapper |
bijux_proteomics_runtime.runs.run_config |
replace agentic_proteins.execution.run_config with bijux_proteomics_runtime.runs.run_config and retire the compat import |
agentic_proteins.execution.runtime |
wrapper |
bijux_proteomics_runtime.execution.engine |
replace agentic_proteins.execution.runtime with bijux_proteomics_runtime.execution.engine and retire the compat import |
agentic_proteins.execution.runtime.executor |
wrapper |
bijux_proteomics_runtime.execution.engine.executor |
replace agentic_proteins.execution.runtime.executor with bijux_proteomics_runtime.execution.engine.executor and retire the compat import |
agentic_proteins.execution.runtime.integration |
wrapper |
bijux_proteomics_runtime.execution.engine.integration |
replace agentic_proteins.execution.runtime.integration with bijux_proteomics_runtime.execution.engine.integration and retire the compat import |
agentic_proteins.execution.schemas |
wrapper |
bijux_proteomics_runtime.execution.schemas |
replace agentic_proteins.execution.schemas with bijux_proteomics_runtime.execution.schemas and retire the compat import |
agentic_proteins.execution.state_machine |
wrapper |
bijux_proteomics_runtime.runs.state_machine |
replace agentic_proteins.execution.state_machine with bijux_proteomics_runtime.runs.state_machine and retire the compat import |
agentic_proteins.execution.telemetry |
wrapper |
bijux_proteomics_runtime.runs.telemetry |
replace agentic_proteins.execution.telemetry with bijux_proteomics_runtime.runs.telemetry and retire the compat import |
agentic_proteins.execution.tool_reliability |
wrapper |
bijux_proteomics_runtime.runs.tool_reliability |
replace agentic_proteins.execution.tool_reliability with bijux_proteomics_runtime.runs.tool_reliability and retire the compat import |
agentic_proteins.execution.validation |
wrapper |
bijux_proteomics_runtime.execution.validation |
replace agentic_proteins.execution.validation with bijux_proteomics_runtime.execution.validation and retire the compat import |
agentic_proteins.interfaces |
wrapper |
bijux_proteomics_runtime.api.app |
replace agentic_proteins.interfaces with bijux_proteomics_runtime.api.app and retire the compat import |
agentic_proteins.interfaces.cli |
wrapper |
bijux_proteomics_runtime.api.cli |
replace agentic_proteins.interfaces.cli with bijux_proteomics_runtime.api.cli and retire the compat import |
agentic_proteins.interfaces.http |
wrapper |
bijux_proteomics_runtime.api.app |
replace agentic_proteins.interfaces.http with bijux_proteomics_runtime.api.app and retire the compat import |
agentic_proteins.interfaces.http.app |
wrapper |
bijux_proteomics_runtime.api.app |
replace agentic_proteins.interfaces.http.app with bijux_proteomics_runtime.api.app and retire the compat import |
agentic_proteins.interfaces.http.deps |
wrapper |
bijux_proteomics_runtime.api.deps |
replace agentic_proteins.interfaces.http.deps with bijux_proteomics_runtime.api.deps and retire the compat import |
agentic_proteins.interfaces.http.errors |
wrapper |
bijux_proteomics_runtime.api.errors |
replace agentic_proteins.interfaces.http.errors with bijux_proteomics_runtime.api.errors and retire the compat import |
agentic_proteins.interfaces.http.middleware |
wrapper |
bijux_proteomics_runtime.api.middleware |
replace agentic_proteins.interfaces.http.middleware with bijux_proteomics_runtime.api.middleware and retire the compat import |
agentic_proteins.interfaces.http.v1 |
dead |
none declared | delete agentic_proteins.interfaces.http.v1 after confirming no callers remain |
agentic_proteins.interfaces.http.v1.endpoints |
wrapper |
bijux_proteomics_runtime.api.v1.endpoints |
replace agentic_proteins.interfaces.http.v1.endpoints with bijux_proteomics_runtime.api.v1.endpoints and retire the compat import |
agentic_proteins.interfaces.http.v1.endpoints.compare |
wrapper |
bijux_proteomics_runtime.api.v1.endpoints.compare |
replace agentic_proteins.interfaces.http.v1.endpoints.compare with bijux_proteomics_runtime.api.v1.endpoints.compare and retire the compat import |
agentic_proteins.interfaces.http.v1.endpoints.inspect |
wrapper |
bijux_proteomics_runtime.api.v1.endpoints.inspect |
replace agentic_proteins.interfaces.http.v1.endpoints.inspect with bijux_proteomics_runtime.api.v1.endpoints.inspect and retire the compat import |
agentic_proteins.interfaces.http.v1.endpoints.resume |
wrapper |
bijux_proteomics_runtime.api.v1.endpoints.resume |
replace agentic_proteins.interfaces.http.v1.endpoints.resume with bijux_proteomics_runtime.api.v1.endpoints.resume and retire the compat import |
agentic_proteins.interfaces.http.v1.endpoints.run |
wrapper |
bijux_proteomics_runtime.api.v1.endpoints.run |
replace agentic_proteins.interfaces.http.v1.endpoints.run with bijux_proteomics_runtime.api.v1.endpoints.run and retire the compat import |
agentic_proteins.interfaces.http.v1.router |
wrapper |
bijux_proteomics_runtime.api.v1.router |
replace agentic_proteins.interfaces.http.v1.router with bijux_proteomics_runtime.api.v1.router and retire the compat import |
agentic_proteins.interfaces.http.v1.schema |
wrapper |
bijux_proteomics_runtime.api.v1.schema |
replace agentic_proteins.interfaces.http.v1.schema with bijux_proteomics_runtime.api.v1.schema and retire the compat import |
agentic_proteins.interfaces.structure_reports |
wrapper |
bijux_proteomics.review.structure_reportsbijux_proteomics.review.structure_reports.render |
replace agentic_proteins.interfaces.structure_reports with one of bijux_proteomics.review.structure_reports, bijux_proteomics.review.structure_reports.render based on the live owner |
agentic_proteins.orchestration |
wrapper |
bijux_proteomics_runtime.executionbijux_proteomics_runtime.governance.compatibility_bridgesbijux_proteomics_runtime.runs |
replace agentic_proteins.orchestration with one of bijux_proteomics_runtime.execution, bijux_proteomics_runtime.governance.compatibility_bridges, bijux_proteomics_runtime.runs based on the live owner |
agentic_proteins.orchestration.analysis |
wrapper |
bijux_proteomics_runtime.runs.analysis |
replace agentic_proteins.orchestration.analysis with bijux_proteomics_runtime.runs.analysis and retire the compat import |
agentic_proteins.orchestration.artifacts |
wrapper |
bijux_proteomics_runtime.runs.artifacts |
replace agentic_proteins.orchestration.artifacts with bijux_proteomics_runtime.runs.artifacts and retire the compat import |
agentic_proteins.orchestration.bridge_contracts |
wrapper |
bijux_proteomics_runtime.governance.compatibility_bridges |
replace agentic_proteins.orchestration.bridge_contracts with bijux_proteomics_runtime.governance.compatibility_bridges and retire the compat import |
agentic_proteins.orchestration.compiler |
wrapper |
bijux_proteomics_runtime.execution.compiler |
replace agentic_proteins.orchestration.compiler with bijux_proteomics_runtime.execution.compiler and retire the compat import |
agentic_proteins.orchestration.compiler.boundary |
wrapper |
bijux_proteomics_runtime.execution.compiler.boundary |
replace agentic_proteins.orchestration.compiler.boundary with bijux_proteomics_runtime.execution.compiler.boundary and retire the compat import |
agentic_proteins.orchestration.evaluation |
wrapper |
bijux_proteomics_runtime.execution.evaluation |
replace agentic_proteins.orchestration.evaluation with bijux_proteomics_runtime.execution.evaluation and retire the compat import |
agentic_proteins.orchestration.evaluation.evaluation |
wrapper |
bijux_proteomics_runtime.execution.evaluation.evaluation |
replace agentic_proteins.orchestration.evaluation.evaluation with bijux_proteomics_runtime.execution.evaluation.evaluation and retire the compat import |
agentic_proteins.orchestration.evaluation.observations |
wrapper |
bijux_proteomics_runtime.execution.evaluation.observations |
replace agentic_proteins.orchestration.evaluation.observations with bijux_proteomics_runtime.execution.evaluation.observations and retire the compat import |
agentic_proteins.orchestration.evaluation.schemas |
wrapper |
bijux_proteomics_runtime.execution.evaluation.schemas |
replace agentic_proteins.orchestration.evaluation.schemas with bijux_proteomics_runtime.execution.evaluation.schemas and retire the compat import |
agentic_proteins.orchestration.graphs |
wrapper |
bijux_proteomics_runtime.execution.graph_validation |
replace agentic_proteins.orchestration.graphs with bijux_proteomics_runtime.execution.graph_validation and retire the compat import |
agentic_proteins.orchestration.logging |
wrapper |
bijux_proteomics_runtime.runs.logging |
replace agentic_proteins.orchestration.logging with bijux_proteomics_runtime.runs.logging and retire the compat import |
agentic_proteins.orchestration.manager |
wrapper |
bijux_proteomics_runtime.runs.manager |
replace agentic_proteins.orchestration.manager with bijux_proteomics_runtime.runs.manager and retire the compat import |
agentic_proteins.orchestration.run_config |
wrapper |
bijux_proteomics_runtime.runs.run_config |
replace agentic_proteins.orchestration.run_config with bijux_proteomics_runtime.runs.run_config and retire the compat import |
agentic_proteins.orchestration.runtime |
wrapper |
bijux_proteomics_runtime.execution.engine |
replace agentic_proteins.orchestration.runtime with bijux_proteomics_runtime.execution.engine and retire the compat import |
agentic_proteins.orchestration.runtime.executor |
wrapper |
bijux_proteomics_runtime.execution.engine.executor |
replace agentic_proteins.orchestration.runtime.executor with bijux_proteomics_runtime.execution.engine.executor and retire the compat import |
agentic_proteins.orchestration.runtime.integration |
wrapper |
bijux_proteomics_runtime.execution.engine.integration |
replace agentic_proteins.orchestration.runtime.integration with bijux_proteomics_runtime.execution.engine.integration and retire the compat import |
agentic_proteins.orchestration.schemas |
wrapper |
bijux_proteomics_runtime.execution.schemas |
replace agentic_proteins.orchestration.schemas with bijux_proteomics_runtime.execution.schemas and retire the compat import |
agentic_proteins.orchestration.state_machine |
wrapper |
bijux_proteomics_runtime.runs.state_machine |
replace agentic_proteins.orchestration.state_machine with bijux_proteomics_runtime.runs.state_machine and retire the compat import |
agentic_proteins.orchestration.telemetry |
wrapper |
bijux_proteomics_runtime.runs.telemetry |
replace agentic_proteins.orchestration.telemetry with bijux_proteomics_runtime.runs.telemetry and retire the compat import |
agentic_proteins.orchestration.tool_reliability |
wrapper |
bijux_proteomics_runtime.runs.tool_reliability |
replace agentic_proteins.orchestration.tool_reliability with bijux_proteomics_runtime.runs.tool_reliability and retire the compat import |
agentic_proteins.orchestration.validation |
wrapper |
bijux_proteomics_runtime.execution.validation |
replace agentic_proteins.orchestration.validation with bijux_proteomics_runtime.execution.validation and retire the compat import |
agentic_proteins.providers |
wrapper |
bijux_proteomics_runtime.providers.assurancebijux_proteomics_runtime.providers.builtin.heuristicbijux_proteomics_runtime.providers.capabilitiesbijux_proteomics_runtime.providers.catalogbijux_proteomics_runtime.providers.contractsbijux_proteomics_runtime.providers.errorsbijux_proteomics_runtime.providers.selection |
replace agentic_proteins.providers with one of bijux_proteomics_runtime.providers.assurance, bijux_proteomics_runtime.providers.builtin.heuristic, bijux_proteomics_runtime.providers.capabilities, bijux_proteomics_runtime.providers.catalog, bijux_proteomics_runtime.providers.contracts, bijux_proteomics_runtime.providers.errors, bijux_proteomics_runtime.providers.selection based on the live owner |
agentic_proteins.providers.base |
wrapper |
bijux_proteomics_runtime.providers.contracts |
replace agentic_proteins.providers.base with bijux_proteomics_runtime.providers.contracts and retire the compat import |
agentic_proteins.providers.capabilities |
wrapper |
bijux_proteomics_runtime.providers.capabilitiesbijux_proteomics_runtime.providers.catalog |
replace agentic_proteins.providers.capabilities with one of bijux_proteomics_runtime.providers.capabilities, bijux_proteomics_runtime.providers.catalog based on the live owner |
agentic_proteins.providers.errors |
wrapper |
bijux_proteomics_runtime.providers.errors |
replace agentic_proteins.providers.errors with bijux_proteomics_runtime.providers.errors and retire the compat import |
agentic_proteins.providers.experimental |
wrapper |
bijux_proteomics_runtime.providers.remote |
replace agentic_proteins.providers.experimental with bijux_proteomics_runtime.providers.remote and retire the compat import |
agentic_proteins.providers.experimental._async_utils |
wrapper |
bijux_proteomics_runtime.providers.remote._async_utils |
replace agentic_proteins.providers.experimental._async_utils with bijux_proteomics_runtime.providers.remote._async_utils and retire the compat import |
agentic_proteins.providers.experimental.colabfold |
wrapper |
bijux_proteomics_runtime.providers.remote.colabfold |
replace agentic_proteins.providers.experimental.colabfold with bijux_proteomics_runtime.providers.remote.colabfold and retire the compat import |
agentic_proteins.providers.experimental.openprotein |
wrapper |
bijux_proteomics_runtime.providers.remote.openprotein |
replace agentic_proteins.providers.experimental.openprotein with bijux_proteomics_runtime.providers.remote.openprotein and retire the compat import |
agentic_proteins.providers.heuristic |
wrapper |
bijux_proteomics_runtime.providers.builtin.heuristic |
replace agentic_proteins.providers.heuristic with bijux_proteomics_runtime.providers.builtin.heuristic and retire the compat import |
agentic_proteins.providers.local |
wrapper |
bijux_proteomics_runtime.providers.local |
replace agentic_proteins.providers.local with bijux_proteomics_runtime.providers.local and retire the compat import |
agentic_proteins.providers.local.esmfold |
wrapper |
bijux_proteomics_runtime.providers.local.esmfold |
replace agentic_proteins.providers.local.esmfold with bijux_proteomics_runtime.providers.local.esmfold and retire the compat import |
agentic_proteins.providers.local.rosettafold |
wrapper |
bijux_proteomics_runtime.providers.local.rosettafold |
replace agentic_proteins.providers.local.rosettafold with bijux_proteomics_runtime.providers.local.rosettafold and retire the compat import |
agentic_proteins.providers.remote |
wrapper |
bijux_proteomics_runtime.providers.remotebijux_proteomics_runtime.providers.remote.colabfoldbijux_proteomics_runtime.providers.remote.openprotein |
replace agentic_proteins.providers.remote with one of bijux_proteomics_runtime.providers.remote, bijux_proteomics_runtime.providers.remote.colabfold, bijux_proteomics_runtime.providers.remote.openprotein based on the live owner |
agentic_proteins.providers.remote._async_utils |
wrapper |
bijux_proteomics_runtime.providers.remote._async_utils |
replace agentic_proteins.providers.remote._async_utils with bijux_proteomics_runtime.providers.remote._async_utils and retire the compat import |
agentic_proteins.providers.remote.colabfold |
wrapper |
bijux_proteomics_runtime.providers.remote.colabfold |
replace agentic_proteins.providers.remote.colabfold with bijux_proteomics_runtime.providers.remote.colabfold and retire the compat import |
agentic_proteins.providers.remote.openprotein |
wrapper |
bijux_proteomics_runtime.providers.remote.openprotein |
replace agentic_proteins.providers.remote.openprotein with bijux_proteomics_runtime.providers.remote.openprotein and retire the compat import |
agentic_proteins.providers.selection |
wrapper |
bijux_proteomics_runtime.providers.selection |
replace agentic_proteins.providers.selection with bijux_proteomics_runtime.providers.selection and retire the compat import |
agentic_proteins.state |
wrapper |
bijux_proteomics_runtime.state.memory_recordsbijux_proteomics_runtime.state.memory_storebijux_proteomics_runtime.state.schemasbijux_proteomics_runtime.state.snapshot |
replace agentic_proteins.state with one of bijux_proteomics_runtime.state.memory_records, bijux_proteomics_runtime.state.memory_store, bijux_proteomics_runtime.state.schemas, bijux_proteomics_runtime.state.snapshot based on the live owner |
agentic_proteins.state.context |
wrapper |
bijux_proteomics_runtime.runs.context |
replace agentic_proteins.state.context with bijux_proteomics_runtime.runs.context and retire the compat import |
agentic_proteins.state.lifecycle |
wrapper |
bijux_proteomics_runtime.runs.lifecycle |
replace agentic_proteins.state.lifecycle with bijux_proteomics_runtime.runs.lifecycle and retire the compat import |
agentic_proteins.state.output |
wrapper |
bijux_proteomics_runtime.runs.output |
replace agentic_proteins.state.output with bijux_proteomics_runtime.runs.output and retire the compat import |
agentic_proteins.state.request |
wrapper |
bijux_proteomics_runtime.runs.request |
replace agentic_proteins.state.request with bijux_proteomics_runtime.runs.request and retire the compat import |
agentic_proteins.state.schemas |
wrapper |
bijux_proteomics_runtime.state.schemas |
replace agentic_proteins.state.schemas with bijux_proteomics_runtime.state.schemas and retire the compat import |
agentic_proteins.state.snapshot |
wrapper |
bijux_proteomics_runtime.state.snapshot |
replace agentic_proteins.state.snapshot with bijux_proteomics_runtime.state.snapshot and retire the compat import |
agentic_proteins.state.workspace |
wrapper |
bijux_proteomics_runtime.support.workspace |
replace agentic_proteins.state.workspace with bijux_proteomics_runtime.support.workspace and retire the compat import |
agentic_proteins.tools |
wrapper |
bijux_proteomics_runtime.execution.tools.basebijux_proteomics_runtime.execution.tools.catalogbijux_proteomics_runtime.execution.tools.contractsbijux_proteomics_runtime.execution.tools.heuristic |
replace agentic_proteins.tools with one of bijux_proteomics_runtime.execution.tools.base, bijux_proteomics_runtime.execution.tools.catalog, bijux_proteomics_runtime.execution.tools.contracts, bijux_proteomics_runtime.execution.tools.heuristic based on the live owner |
agentic_proteins.tools.base |
wrapper |
bijux_proteomics_runtime.execution.tools.base |
replace agentic_proteins.tools.base with bijux_proteomics_runtime.execution.tools.base and retire the compat import |
agentic_proteins.tools.catalog |
wrapper |
bijux_proteomics_runtime.execution.tools.catalog |
replace agentic_proteins.tools.catalog with bijux_proteomics_runtime.execution.tools.catalog and retire the compat import |
agentic_proteins.tools.contracts |
wrapper |
bijux_proteomics_runtime.execution.tools.contracts |
replace agentic_proteins.tools.contracts with bijux_proteomics_runtime.execution.tools.contracts and retire the compat import |
agentic_proteins.tools.heuristic |
wrapper |
bijux_proteomics_runtime.execution.tools.heuristic |
replace agentic_proteins.tools.heuristic with bijux_proteomics_runtime.execution.tools.heuristic and retire the compat import |
agentic_proteins.tools.schemas |
wrapper |
bijux_proteomics_runtime.execution.tools.schemas |
replace agentic_proteins.tools.schemas with bijux_proteomics_runtime.execution.tools.schemas and retire the compat import |
Reading The Guide¶
wrappermeans the compatibility module is a narrow bridge and callers should move directly to the named canonical target.deadmeans the module no longer carries meaningful behavior and should be deleted once callers disappear.canonicalorduplicatewould be release-blocking because the compatibility family is not allowed to regain original product logic.- this document should be regenerated whenever compatibility forwarding changes so release and retirement discussions are based on current code rather than memory.