bijux-proteomics-core¶

bijux-proteomics-core owns durable program contracts in bijux-proteomics. It is where workflows, lifecycle state, gates, and other long-lived rules are defined before downstream packages score, execute, or act on them. If foundation is the shared language, core is the constitutional layer: it decides which states exist, which transitions are legal, and which constraints the rest of the system is not allowed to improvise around.

flowchart LR
    foundation["foundation<br/>shared payload meaning"]
    core["core<br/>program contracts and lifecycle rules"]
    knowledge["knowledge<br/>evidence state"]
    intelligence["intelligence<br/>decision policy"]
    runtime["runtime<br/>execution control"]
    lab["lab<br/>assay loop"]

    foundation --> core
    core --> knowledge
    core --> intelligence
    core --> runtime
    core --> lab

Why This Package Exists¶

the system needs one place where workflow and gate semantics stay durable
downstream packages should inherit program rules, not reinvent them
lifecycle design should be inspectable before it turns into runtime behavior or policy code

What It Owns¶

program models and lifecycle rules
gate semantics and durable workflow constraints
core contracts that downstream packages depend on

Start With¶

Open Foundation for the package role and contract boundary.
Open Interfaces when the issue is a public contract or package-facing surface.
Open bijux-proteomics-intelligence when the concern becomes recommendation policy rather than durable program rules.

What It Refuses¶

shared serialization primitives that belong in foundation
evidence truth and confidence policy that belong in knowledge
execution orchestration that belongs in runtime

First Proof Check¶

packages/bijux-proteomics-core/src/bijux_proteomics
packages/bijux-proteomics-core/tests
public contract artifacts when a core API surface changes