Common Workflows

Common workflows should sound like the real jobs people do with the package, not generic process filler.

Operating Rules

• verify a legacy import, CLI, or API path still reaches the intended runtime behavior
• document whether the change preserves, narrows, or retires a compatibility promise
• update migration-facing docs when a legacy path becomes easier to remove

First Proof Check

• src/agentic_proteins/interfaces/cli.py and api/app.py
• src/agentic_proteins/runtime/ and providers/
• packages/agentic-proteins/tests