Public Imports

Public imports should make it obvious which modules are safe to rely on and which ones are just nearby implementation detail.

The canonical runtime API root is apis/bijux-proteomics-runtime/v1; the compatibility mirror root is apis/agentic-proteins/v1.

Package Surface

• agentic_proteins import paths that still exist for compatibility review
• agentic_proteins.interfaces and api for public entrypoints that forward toward the canonical runtime
• agentic_proteins.execution, state, and report only where callers still depend on those shapes

First Proof Check

• src/agentic_proteins/interfaces/cli.py
• src/agentic_proteins/api/app.py
• packages/agentic-proteins/tests