Architecture Risks

Architecture risk in bijux-proteomics-core is mostly boundary risk: the package stops being obviously itself and starts carrying work that belongs elsewhere.

Risk Pressure

• runtime-specific behavior leaks into core because it feels adjacent to execution contracts
• biology terms fork across modules and weaken the shared contract model
• downstream policy starts masquerading as a core invariant

First Proof Check

• recent structural changes in the package
• tests and docs that still defend the original split
• neighboring handbook branches most likely to absorb the drift