Execution Model

The execution model for agentic-proteins should make it clear how package-owned work progresses without quietly taking over a neighbor's job.

Flow

• legacy CLI, API, or import entrypoints arrive through interfaces/ or api/
• compatibility logic in core/ and execution/ translates the request into runtime-compatible behavior
• runtime, provider, report, and state modules preserve inspectable outputs until the path can be retired

First Proof Check

• the owning modules for each flow stage
• package tests that prove the transition points
• downstream or upstream handbooks when the flow crosses package boundaries