Foundation¶

The foundation section explains the durable role of bijux-proteomics-intelligence before it explains implementation detail. Use it to resolve why decision policy belongs here without pretending to own evidence truth or execution.

flowchart LR
    evidence["evidence input"]
    constraints["program constraints"]
    policy["scoring and scenario policy"]
    explanation["explanations"]
    intelligence["intelligence foundation"]
    action["downstream action"]

    evidence --> intelligence
    constraints --> intelligence
    policy --> intelligence
    intelligence --> explanation
    intelligence --> action

What This Section Protects¶

a visible seam between fact and judgment
recommendation logic that can be argued about instead of merely obeyed
explanation surfaces that stay tied to policy rather than pretending to be raw evidence

Start With¶

Open Package Overview for the shortest statement of the package role.
Open Ownership Boundary when the question is whether a change belongs here or in a neighbor.
Open Scope and Non-Goals when a proposed change risks broadening the package.
Open Capability Map when you need the concrete work the package is allowed to do.

Section Pages¶

What This Section Settles¶

when a rule is a judgment policy rather than a knowledge claim
which recommendation behavior belongs here before runtime or lab acts on it
when a proposed change is really about evidence truth or workflow rules and should leave this package

First Proof Check¶

packages/bijux-proteomics-intelligence/src/bijux_proteomics_intelligence
packages/bijux-proteomics-intelligence/tests
neighboring handbooks once the change crosses the local boundary

Neighbors¶

Open bijux-proteomics-knowledge when the question leaves scoring, ranking, scenarios, and explanations.
Open bijux-proteomics-core when the issue is clearly outside this package's local role.