Black-Box Run Verification¶
These routes begin from one public benchmark asset and end at one checked runtime bundle, stage lineage artifact, and replay challenge. The route is black-box on purpose: the reader should not need maintainer narration to find the next artifact.
This page is narrower than the rerun kits. The rerun kits answer "where do I start for this family?" This page answers "what exact artifact chain proves that the shipped benchmark packet became the checked runtime story?"
What Counts As Verification¶
- the benchmark entry artifact fixes the public package boundary
- the source locator manifest proves where the benchmark packet points for its runtime-facing inputs
- the checked runtime bundle proves the emitted execution summary that the repository currently stands behind
- the stage lineage artifact shows that the run is not only a terminal output
- the replay artifact shows how the same route should fail under hostile pressure rather than only how it succeeds
dda¶
- benchmark entry artifact:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/dda_reviewable_run/package_manifest.json - source locator manifest:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/dda_reviewable_run/source_locator_manifest.json - runtime package id:
dda-maxquant-pipeline-corpus - runtime entrypoint:
bijux_proteomics_runtime.workflows.paths.run_reviewable_import_path - run mode:
import_only - checked runtime bundle:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/dda/run_bundle.json - stage lineage artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/dda/stage_lineage.json - replay artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/dda/failure_replay.json - validating tests:
packages/bijux-proteomics-runtime/tests/workflows/test_runtime_external_pack_surface.py - note: Open the public benchmark manifest first, then the source locator, then the checked runtime bundle, stage lineage, and replay artifact. The route is meant to survive without maintainer narration.
dia¶
- benchmark entry artifact:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/dia_library_review_package/package_manifest.json - source locator manifest:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/dia_library_review_package/source_locator_manifest.json - runtime package id:
dia-diann-pipeline-corpus - runtime entrypoint:
bijux_proteomics_runtime.workflows.benchmark_runs.run_benchmark_dia_review_path - run mode:
raw_executable - checked runtime bundle:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/dia/run_bundle.json - stage lineage artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/dia/stage_lineage.json - replay artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/dia/failure_replay.json - validating tests:
packages/bijux-proteomics-runtime/tests/workflows/test_runtime_external_pack_surface.py - note: Open the public benchmark manifest first, then the source locator, then the checked runtime bundle, stage lineage, and replay artifact. The route is meant to survive without maintainer narration.
lfq¶
- benchmark entry artifact:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/lfq_cohort_review_package/package_manifest.json - source locator manifest:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/lfq_cohort_review_package/source_locator_manifest.json - runtime package id:
lfq-cohort-review-corpus - runtime entrypoint:
bijux_proteomics_runtime.workflows.benchmark_runs.run_benchmark_lfq_review_path - run mode:
raw_executable - checked runtime bundle:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/lfq/run_bundle.json - stage lineage artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/lfq/stage_lineage.json - replay artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/lfq/failure_replay.json - validating tests:
packages/bijux-proteomics-runtime/tests/workflows/test_flagship_run_bundle_surface.py - note: Open the public benchmark manifest first, then the source locator, then the checked runtime bundle, stage lineage, and replay artifact. The route is meant to survive without maintainer narration.
multiplex¶
- benchmark entry artifact:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/multiplex_tmtpro_review_package/package_manifest.json - source locator manifest:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/multiplex_tmtpro_review_package/source_locator_manifest.json - runtime package id:
multiplex-tmtpro-review-corpus - runtime entrypoint:
bijux_proteomics_runtime.workflows.benchmark_runs.run_benchmark_multiplex_review_path - run mode:
raw_executable - checked runtime bundle:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/multiplex/run_bundle.json - stage lineage artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/multiplex/stage_lineage.json - replay artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/multiplex/failure_replay.json - validating tests:
packages/bijux-proteomics-runtime/tests/workflows/test_flagship_run_bundle_surface.py - note: Open the public benchmark manifest first, then the source locator, then the checked runtime bundle, stage lineage, and replay artifact. The route is meant to survive without maintainer narration.
ptm¶
- benchmark entry artifact:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/ptm_localization_review_package/package_manifest.json - source locator manifest:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/ptm_localization_review_package/source_locator_manifest.json - runtime package id:
ptm-localization-review-corpus - runtime entrypoint:
bijux_proteomics_runtime.workflows.benchmark_runs.run_benchmark_ptm_review_path - run mode:
raw_executable - checked runtime bundle:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/ptm/run_bundle.json - stage lineage artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/ptm/stage_lineage.json - replay artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/ptm/failure_replay.json - validating tests:
packages/bijux-proteomics-runtime/tests/workflows/test_flagship_run_bundle_surface.py - note: Open the public benchmark manifest first, then the source locator, then the checked runtime bundle, stage lineage, and replay artifact. The route is meant to survive without maintainer narration.
targeted¶
- benchmark entry artifact:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/targeted_transition_review_package/package_manifest.json - source locator manifest:
packages/bijux-proteomics-core/benchmark-assets/flagship-public-packages/targeted_transition_review_package/source_locator_manifest.json - runtime package id:
targeted-transition-review-corpus - runtime entrypoint:
bijux_proteomics_runtime.workflows.benchmark_runs.run_benchmark_targeted_review_path - run mode:
raw_executable - checked runtime bundle:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/targeted/run_bundle.json - stage lineage artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/targeted/stage_lineage.json - replay artifact:
packages/bijux-proteomics-runtime/tests/fixtures/flagship_runs/targeted/failure_replay.json - validating tests:
packages/bijux-proteomics-runtime/tests/workflows/test_flagship_run_bundle_surface.py - note: Open the public benchmark manifest first, then the source locator, then the checked runtime bundle, stage lineage, and replay artifact. The route is meant to survive without maintainer narration.
What This Route Protects Against¶
- claiming that a benchmark package is reviewable when no checked runtime story exists
- confusing a successful bundle with an untested replay boundary
- hiding execution lineage behind one terminal artifact