bijux-proteomics-knowledge¶

bijux-proteomics-knowledge owns evidence state in bijux-proteomics. It is where claims, confidence, contradiction handling, and knowledge-level review rules stay explicit instead of being spread across runtime or scoring code. This package matters because serious systems do not only need facts; they need structured disagreement, confidence, and traceable reasons to hesitate.

flowchart LR
    inputs["observations, records,<br/>derived findings"]
    claims["claims"]
    confidence["confidence"]
    contradictions["contradictions"]
    knowledge["knowledge<br/>evidence state"]
    intelligence["intelligence"]
    lab["lab"]
    runtime["runtime"]

    inputs --> claims
    inputs --> confidence
    inputs --> contradictions
    claims --> knowledge
    confidence --> knowledge
    contradictions --> knowledge
    knowledge --> intelligence
    knowledge --> lab
    knowledge --> runtime

What This Package Protects¶

recommendation code cannot quietly rewrite evidence state
runtime code cannot smuggle operational convenience in as scientific truth
contradiction is preserved as information instead of being treated as failure

What It Owns¶

evidence records and claim state
confidence semantics and contradiction handling
knowledge-level review boundaries used by downstream packages

Start With¶

Open Foundation for the package role and boundary.
Open Interfaces when the question is a claim, evidence, or confidence-facing contract.
Open bijux-proteomics-intelligence when the change becomes ranking policy rather than evidence truth.

What It Refuses¶

scoring and recommendation policy
execution orchestration and operator surfaces
assay planning and outcome promotion

First Proof Check¶

packages/bijux-proteomics-knowledge/src/bijux_proteomics_knowledge
packages/bijux-proteomics-knowledge/tests
confidence and contradiction modules once the claim narrows to one seam