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Module Map

bijux-proteomics-core stays reviewable only when its structural families remain easy to name and defend. The package owns durable program contracts and biological domain primitives, so its modules should read like one coherent argument for that role.

Owned Module Families

  • src/bijux_proteomics/program_spec.py, programs.py, and targets.py own durable program contracts
  • src/bijux_proteomics/lifecycle.py, validation.py, execution_contracts.py, and constraints.py own readiness and execution rules
  • src/bijux_proteomics/biology/, domain/, and runtime_adapter.py hold domain primitives and structural seams to neighboring packages

First Proof Check

  • packages/bijux-proteomics-core/src/bijux_proteomics
  • the matching package tests
  • neighboring handbook branches when a module starts to look shared