Package Contributor Onboarding

Use this page when a contributor is new to the package family and needs the shortest honest path to the right package, docs, and tests.

First Moves

1. start with the repository handbook and the target package README.md before editing code
2. open the package docs root and package tests before inventing a new pattern
3. check direct workspace dependencies so boundary pressure is visible before implementation

Package Map

package	distribution	import root	direct workspace dependencies	read first	tests	docs
agentic-proteins	agentic-proteins	agentic_proteins	bijux-proteomics-core, bijux-proteomics-runtime	packages/agentic-proteins/README.md	packages/agentic-proteins/tests	docs/02-agentic-proteins
bijux-proteomics-dev	bijux-proteomics-dev	bijux_proteomics_dev	agentic-proteins	packages/bijux-proteomics-dev/README.md	packages/bijux-proteomics-dev/tests	docs/08-bijux-proteomics-maintain/bijux-proteomics-dev
bijux-proteomics-foundation	bijux-proteomics-foundation	bijux_proteomics_foundation	none	packages/bijux-proteomics-foundation/README.md	packages/bijux-proteomics-foundation/tests	docs/03-bijux-proteomics-foundation
bijux-proteomics-core	bijux-proteomics-core	bijux_proteomics	bijux-proteomics-foundation	packages/bijux-proteomics-core/README.md	packages/bijux-proteomics-core/tests	docs/04-bijux-proteomics-core
bijux-proteomics-runtime	bijux-proteomics-runtime	bijux_proteomics_runtime	bijux-proteomics-core, bijux-proteomics-foundation, bijux-proteomics-intelligence, bijux-proteomics-knowledge, bijux-proteomics-lab	packages/bijux-proteomics-runtime/README.md	packages/bijux-proteomics-runtime/tests	docs/09-bijux-proteomics-runtime
bijux-proteomics-intelligence	bijux-proteomics-intelligence	bijux_proteomics_intelligence	bijux-proteomics-core, bijux-proteomics-foundation, bijux-proteomics-knowledge	packages/bijux-proteomics-intelligence/README.md	packages/bijux-proteomics-intelligence/tests	docs/05-bijux-proteomics-intelligence
bijux-proteomics-knowledge	bijux-proteomics-knowledge	bijux_proteomics_knowledge	bijux-proteomics-foundation	packages/bijux-proteomics-knowledge/README.md	packages/bijux-proteomics-knowledge/tests	docs/06-bijux-proteomics-knowledge
bijux-proteomics-lab	bijux-proteomics-lab	bijux_proteomics_lab	bijux-proteomics-core, bijux-proteomics-foundation, bijux-proteomics-knowledge	packages/bijux-proteomics-lab/README.md	packages/bijux-proteomics-lab/tests	docs/07-bijux-proteomics-lab
bijux-proteomics	bijux-proteomics	bijux_proteomics_alias	bijux-proteomics-core	packages/bijux-proteomics/README.md	packages/bijux-proteomics/tests	docs/01-bijux-proteomics
proteomics	proteomics	proteomics	bijux-proteomics-core	packages/proteomics/README.md	packages/proteomics/tests	docs/01-bijux-proteomics
proteomics-core	proteomics-core	proteomics_core	bijux-proteomics-core	packages/proteomics-core/README.md	packages/proteomics-core/tests	docs/04-bijux-proteomics-core
proteomics-foundation	proteomics-foundation	proteomics_foundation	bijux-proteomics-foundation	packages/proteomics-foundation/README.md	packages/proteomics-foundation/tests	docs/03-bijux-proteomics-foundation
proteomics-runtime	proteomics-runtime	proteomics_runtime	bijux-proteomics-runtime	packages/proteomics-runtime/README.md	packages/proteomics-runtime/tests	docs/09-bijux-proteomics-runtime
proteomics-intelligence	proteomics-intelligence	proteomics_intelligence	bijux-proteomics-intelligence	packages/proteomics-intelligence/README.md	packages/proteomics-intelligence/tests	docs/05-bijux-proteomics-intelligence
proteomics-knowledge	proteomics-knowledge	proteomics_knowledge	bijux-proteomics-knowledge	packages/proteomics-knowledge/README.md	packages/proteomics-knowledge/tests	docs/06-bijux-proteomics-knowledge
proteomics-lab	proteomics-lab	proteomics_lab	bijux-proteomics-lab	packages/proteomics-lab/README.md	packages/proteomics-lab/tests	docs/07-bijux-proteomics-lab

Reading Order

• choose bijux-proteomics-dev for repo policy, docs integrity, release validation, and package boundary checks
• choose bijux-proteomics-core for scientific contracts and stable proteomics model behavior
• choose bijux-proteomics-runtime only when the concern is orchestration, replay, or execution control
• treat agentic-proteins as compatibility stewardship, not a place for new product growth