Common Workflows

Common workflows should sound like the real jobs people do with the package, not generic process filler.

Operating Rules

• compare recommendation changes against the evidence and contract inputs that drove them
• review whether new metrics or evaluators improve explanation as well as ranking
• update example outputs when a public recommendation artifact changes

First Proof Check

• src/bijux_proteomics_intelligence/policies.py and evaluators.py
• src/bijux_proteomics_intelligence/report/ and outcomes.py
• packages/bijux-proteomics-intelligence/tests