Failure Recovery

Recovery guidance should help maintainers restore the right behavior, not just any working state.

Operating Rules

• recover by restoring the intended contract meaning first
• separate bad lifecycle rules from downstream integration failures
• treat emergency compatibility shims as temporary until contract proof is repaired

First Proof Check

• src/bijux_proteomics/domain/program_spec.py and domain/targets.py
• src/bijux_proteomics/domain/lifecycle.py and domain/validation.py
• packages/bijux-proteomics-core/tests