Public Artifact Index

Public claims in Bijux Proteomics are backed by different artifact classes. Each artifact has an owner package, a review question it can answer, and a boundary beyond which it provides no authority. Review starts with the claim, opens the strongest relevant evidence, and follows its identifiers back to the underlying source and run records.

Evidence Flow

flowchart LR
    lineage["Core lineage + benchmark manifest"] --> run["Runtime run bundle"]
    run --> grounding["Knowledge evidence bundle"]
    grounding --> decision["Intelligence recommendation record"]
    decision --> lab["Lab readiness or outcome dossier"]
    lab --> release["release candidate evidence"]

Governed Artifact Registry

The registry contains 20 artifacts under a governed budget of 20.

Artifact id	Owner package	Audience	Question answered	Evidence locator
artifact-index:release-candidate	bijux-proteomics-docs	scientist	Which workflow families can the repository defend today?	docs/01-bijux-proteomics/foundation/flagship-release-candidate.md
artifact-index:elite-readiness-scorecard	bijux-proteomics-docs	maintainer	How far may repository-wide language go today?	docs/01-bijux-proteomics/foundation/elite-readiness-scorecard.md
artifact-index:hostile-review-kit	bijux-proteomics-docs	skeptical outsider	What is the shortest whole-repository challenge route?	docs/01-bijux-proteomics/foundation/hostile-review-kit.md
artifact-index:why-not-ready	bijux-proteomics-docs	reviewer	Which blocked release bars still fail right now?	docs/01-bijux-proteomics/foundation/why-this-repository-is-not-ready-yet.md
artifact-index:what-makes-ready	bijux-proteomics-docs	maintainer	What concrete evidence would move the release boundary next?	docs/01-bijux-proteomics/foundation/what-would-make-this-repository-ready.md
artifact-index:dda:trust-page	bijux-proteomics-docs	scientist	Why does dda still earn bounded outsider-auditable language today?	docs/01-bijux-proteomics/foundation/why-trust-dda.md
artifact-index:dda:independent-rerun	bijux-proteomics-intelligence	operator	Can dda survive a second checked rerun challenge?	artifacts/intelligence/independent-reruns/dda_independent_rerun_dossier.json
artifact-index:dda:external-review-kit	bijux-proteomics-intelligence	skeptical outsider	What should an outsider open to challenge the dda sentence?	artifacts/intelligence/external-review-kits/dda_external_review_kit.json
artifact-index:dia:trust-page	bijux-proteomics-docs	scientist	Why does dia still earn bounded outsider-auditable language today?	docs/01-bijux-proteomics/foundation/why-trust-dia.md
artifact-index:dia:independent-rerun	bijux-proteomics-intelligence	operator	Can dia survive a second checked rerun challenge?	artifacts/intelligence/independent-reruns/dia_independent_rerun_dossier.json
artifact-index:dia:external-review-kit	bijux-proteomics-intelligence	skeptical outsider	What should an outsider open to challenge the dia sentence?	artifacts/intelligence/external-review-kits/dia_external_review_kit.json
artifact-index:lfq:trust-page	bijux-proteomics-docs	scientist	Why does lfq still earn bounded outsider-auditable language today?	docs/01-bijux-proteomics/foundation/why-trust-lfq.md
artifact-index:lfq:independent-rerun	bijux-proteomics-intelligence	operator	Can lfq survive a second checked rerun challenge?	artifacts/intelligence/independent-reruns/lfq_independent_rerun_dossier.json
artifact-index:lfq:external-review-kit	bijux-proteomics-intelligence	skeptical outsider	What should an outsider open to challenge the lfq sentence?	artifacts/intelligence/external-review-kits/lfq_external_review_kit.json
artifact-index:ptm:trust-page	bijux-proteomics-docs	scientist	Why does ptm still earn bounded outsider-auditable language today?	docs/01-bijux-proteomics/foundation/why-trust-ptm.md
artifact-index:ptm:independent-rerun	bijux-proteomics-intelligence	operator	Can ptm survive a second checked rerun challenge?	artifacts/intelligence/independent-reruns/ptm_independent_rerun_dossier.json
artifact-index:ptm:external-review-kit	bijux-proteomics-intelligence	skeptical outsider	What should an outsider open to challenge the ptm sentence?	artifacts/intelligence/external-review-kits/ptm_external_review_kit.json
artifact-index:targeted:trust-page	bijux-proteomics-docs	scientist	Why does targeted still earn bounded outsider-auditable language today?	docs/01-bijux-proteomics/foundation/why-trust-targeted.md
artifact-index:targeted:independent-rerun	bijux-proteomics-intelligence	operator	Can targeted survive a second checked rerun challenge?	artifacts/intelligence/independent-reruns/targeted_independent_rerun_dossier.json
artifact-index:targeted:external-review-kit	bijux-proteomics-intelligence	skeptical outsider	What should an outsider open to challenge the targeted sentence?	artifacts/intelligence/external-review-kits/targeted_external_review_kit.json

Open Evidence In Order

1. Identify the exact workflow family and proposed public sentence.
2. Open its benchmark manifest, companion package, and Core lineage.
3. Verify Runtime entrypoints, environment, run identity, artifacts, and comparison policy.
4. Inspect support, contradiction, and unresolved context in Knowledge.
5. Inspect recommendation sensitivity, downgrade, refusal, and human-review state.
6. Inspect laboratory readiness, burden, controls, and observed outcome.
7. Compare the surviving sentence with the current release claim limit.

An independent rerun dossier gives the runtime and comparison opening path. An external review kit adds scientific, decision, and consequence pressure without requiring private maintainer context.

Artifact Coexistence

The index exists so a hostile reader can open the strongest current surfaces in a stable order instead of reverse-engineering the repository by package structure.

The coexistence rationale must identify the distinct review question or authority layer preserved by each artifact. A benchmark manifest defines scientific inputs; a run bundle records execution. A generated summary provides navigation; its source records carry the proof.

Coexistence is not justified when two pages repeat the same conclusion, a generated view has no freshness check, or readers can mistake a weaker artifact for the stronger authority. In those cases, consolidate the duplicate or make the authority difference explicit.

Use the Public Artifact Role Matrix to compare stronger and weaker neighbors for every governed artifact.

Integrity Rules

• every artifact identity resolves to an owner and versioned source;
• generated artifacts name their generator and freshness check;
• summaries retain identifiers for the records they omit;
• local run products remain under artifacts/ until explicitly promoted;
• a stale, missing, contradicted, or refused artifact narrows the public claim;
• artifact count never substitutes for independent challenge value.