Mastery Map¶

Page Maps¶

graph LR
  family["Reproducible Research"]
  program["Deep Dive Snakemake"]
  section["Orientation"]
  page["Mastery Map"]
  capstone["Capstone evidence"]

  family --> program --> section --> page
  page -.applies in.-> capstone

flowchart LR
  orient["Orient on the page map"] --> read["Read the main claim and examples"]
  read --> inspect["Inspect the related code, proof, or capstone surface"]
  inspect --> verify["Run or review the verification path"]
  verify --> apply["Apply the idea back to the module and capstone"]

Use this page when the course is no longer about first contact or ordinary study rhythm. The goal here is stewardship: decide what the workflow can still promise honestly, what must change, and what should move outside Snakemake instead of being hidden inside it.

Return by late-course pressure¶

If the pressure is...	Revisit	Keep nearby	Capstone cross-check
what evidence should come before editing a slow or flaky workflow	Module 09	Review Checklist	Capstone Review Worksheet
what downstream users are actually allowed to trust	Modules 06 to 09	Boundary Review Prompts	Capstone Proof Guide
whether policy drift is being mistaken for workflow meaning	Modules 08 to 10	Topic Boundaries	Capstone Architecture Guide
whether Snakemake should keep owning the concern at all	Module 10	Anti-Pattern Atlas	Capstone Review Worksheet

Late-course route¶

Module 09: incident response¶

Use Module 09 when the review question is observability, incident pressure, or what the next evidence surface should be before any workflow edit.

Module 10: governance and migration¶

Use Module 10 when the review question is long-lived ownership.

Re-read the module as a boundary decision, not as a recap.
Ask which responsibilities still belong in the workflow layer and which should move to clearer software, policy, or publish boundaries.

Good mastery signal¶

You are using this map well when you can say all three:

which workflow claim is under review right now
which proof route is proportionate instead of theatrical
what you would still reject even if the repository currently runs