graph LR
family["Reproducible Research"]
program["Deep Dive Snakemake"]
section["Capstone"]
page["Deep Dive Snakemake Capstone Guide"]
capstone["Capstone evidence"]
family --> program --> section --> page
page -.applies in.-> capstone
flowchart LR
orient["Orient on the page map"] --> read["Read the main claim and examples"]
read --> inspect["Inspect the related code, proof, or capstone surface"]
inspect --> verify["Run or review the verification path"]
verify --> apply["Apply the idea back to the module and capstone"]
This capstone is the executable reference workflow for Deep Dive Snakemake. It keeps rule
contracts, dynamic discovery, operating policy, and publish trust visible in one place so
the workflow can be reviewed as a real repository rather than as terminal folklore.
Use this guide once the local module idea is already clear. The capstone should
corroborate one workflow claim at a time, not become the first explanation of Snakemake.