Capstone Glossary

Page Maps

graph LR
  family["Reproducible Research"]
  program["Deep Dive Snakemake"]
  section["Capstone"]
  page["Capstone Glossary"]
  capstone["Capstone evidence"]

  family --> program --> section --> page
  page -.applies in.-> capstone

flowchart LR
  orient["Orient on the page map"] --> read["Read the main claim and examples"]
  read --> inspect["Inspect the related code, proof, or capstone surface"]
  inspect --> verify["Run or review the verification path"]
  verify --> apply["Apply the idea back to the module and capstone"]

Use this page when the Snakemake capstone routes start sounding interchangeable. The goal is to keep workflow meaning, operating policy, and publish trust separate.

Term	Meaning here
walkthrough	the bounded first pass through the workflow repository before stronger executed proof
rule contract	the explicit input, output, and log relationship a rule is allowed to promise
discovery evidence	the durable artifact that records what dynamic discovery found instead of leaving it implicit
operating policy	executor, resource, and environment settings that change how the workflow runs without redefining its meaning
semantic drift	a change that alters workflow meaning rather than only execution policy
publish boundary	the downstream-facing output surface another person is allowed to trust
saved evidence bundle	an exported artifact set that lets a reviewer inspect the workflow later
stewardship review	the stronger route used when a maintainer must judge the whole repository, not only one run