Skip to content

Package Overview

bijux-proteomics-foundation exists so shared document primitives stay consistent across all proteomics packages. Its job is to own schema profiles, canonical serialization, stable identifiers, and migration helpers that keep cross-package payloads compatible over time.

If a reader cannot explain this package in one or two sentences after skimming this page, the package boundary is still too fuzzy and later pages will inherit that confusion.

Treat the foundation pages for bijux-proteomics-foundation as the package's durable self-description. If the package still feels blurry after this section, the boundary story is not clear enough yet.

Visual Summary

flowchart LR
    page["Package Overview<br/>clarifies: own the right work | name the boundary | compare neighbors"]
    classDef page fill:#dbeafe,stroke:#1d4ed8,color:#1e3a8a,stroke-width:2px;
    classDef positive fill:#dcfce7,stroke:#16a34a,color:#14532d;
    classDef caution fill:#fee2e2,stroke:#dc2626,color:#7f1d1d;
    classDef anchor fill:#ede9fe,stroke:#7c3aed,color:#4c1d95;
    classDef action fill:#fef3c7,stroke:#d97706,color:#7c2d12;
    own1["schema profiles and compatibility checks"]
    own1 --> page
    own2["canonical serialization and deterministic fingerprints"]
    own2 --> page
    own3["identifier and migration primitives"]
    own3 --> page
    limit1["runtime orchestration policy"]
    page -.keeps outside.-> limit1
    limit2["candidate-scoring and evidence policy"]
    page -.keeps outside.-> limit2
    limit3["repository tooling and release support"]
    page -.keeps outside.-> limit3
    anchor1["packages/bijux-proteomics-foundation"]
    page --> anchor1
    anchor2["packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation"]
    page --> anchor2
    anchor3["packages/bijux-proteomics-foundation/tests"]
    page --> anchor3
    class page page;
    class own1,own2,own3 positive;
    class limit1,limit2,limit3 caution;
    class anchor1,anchor2,anchor3 anchor;

What It Owns

  • schema profile and compatibility primitives
  • canonical serialization and fingerprint helpers
  • migration-oriented contract helpers
  • identifier and error primitives used by higher-level packages

What It Does Not Own

  • runtime orchestration policy
  • intelligence and lab decision policy
  • repository tooling and release support

Concrete Anchors

  • packages/bijux-proteomics-foundation as the package root
  • packages/bijux-proteomics-foundation/src/bijux_proteomics_foundation as the import boundary
  • packages/bijux-proteomics-foundation/tests as the package proof surface

Use This Page When

  • you need the package idea before the implementation detail
  • you are deciding whether work belongs here or in a neighboring package
  • you want the shortest honest explanation of what this package is for

Decision Rule

Use Package Overview to decide whether a change makes bijux-proteomics-foundation easier or harder to defend as one distinct role in the overall system. If the work makes the package broader without making its role clearer, stop and re-check the boundary before treating the change as a local improvement.

What This Page Answers

  • what problem bijux-proteomics-foundation is supposed to own on purpose
  • where the package boundary stops, even when nearby code looks tempting
  • which neighboring package seams deserve comparison before the boundary is changed

Reviewer Lens

  • compare the stated boundary with the modules, artifacts, and tests that are supposed to uphold it
  • check that out-of-scope behavior is not quietly re-entering through convenience paths
  • confirm that the package story still matches the real repository layout and neighboring package docs

Honesty Boundary

This page can explain the intended boundary of bijux-proteomics-foundation, but it cannot prove that boundary by itself. The real proof still lives in the code, tests, and neighboring package seams that either support or contradict the story told here.

Next Checks

  • move to architecture when the question becomes structural rather than boundary-oriented
  • move to interfaces when the question becomes contract-facing
  • move to quality when the question becomes proof or review sufficiency

Purpose

This page gives the shortest honest description of what the package is for.

Stability

Keep it aligned with the real package boundary described by the code and tests.